seqcombo

DOI: 10.18129/B9.bioc.seqcombo    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see seqcombo.

Visualization Tool for Sequence Recombination and Reassortment

Bioconductor version: 3.8

Provides useful functions for visualizing sequence recombination and virus reassortment events.

Author: Guangchuang Yu [aut, cre]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("seqcombo")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("seqcombo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqcombo")

 

HTML R Script Reassortment
HTML R Script seqcombo introduction
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Software, Visualization
Version 1.4.1
In Bioconductor since BioC 3.6 (R-3.4) (1.5 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports Biostrings, cowplot, dplyr, ggplot2, grid, igraph, magrittr, methods, rvcheck, utils
LinkingTo
Suggests emojifont, knitr, prettydoc, tibble
SystemRequirements
Enhances
URL
BugReports https://github.com/GuangchuangYu/seqcombo/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqcombo_1.4.1.tar.gz
Windows Binary seqcombo_1.4.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) seqcombo_1.4.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/seqcombo
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/seqcombo
Package Short Url http://bioconductor.org/packages/seqcombo/
Package Downloads Report Download Stats

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