seqcombo

DOI: 10.18129/B9.bioc.seqcombo    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see seqcombo.

Visualization Tool for Sequence Recombination and Reassortment

Bioconductor version: 3.8

Provides useful functions for visualizing sequence recombination and virus reassortment events.

Author: Guangchuang Yu [aut, cre]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("seqcombo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqcombo")

 

HTML	R Script	Reassortment
HTML	R Script	seqcombo introduction
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Software, Visualization
Version	1.4.1
In Bioconductor since	BioC 3.6 (R-3.4) (1.5 years)
License	Artistic-2.0
Depends	R (>= 3.4.0)
Imports	Biostrings, cowplot, dplyr, ggplot2, grid, igraph, magrittr, methods, rvcheck, utils
LinkingTo
Suggests	emojifont, knitr, prettydoc, tibble
SystemRequirements
Enhances
URL
BugReports	https://github.com/GuangchuangYu/seqcombo/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	seqcombo_1.4.1.tar.gz
Windows Binary	seqcombo_1.4.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	seqcombo_1.4.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/seqcombo
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/seqcombo
Package Short Url	http://bioconductor.org/packages/seqcombo/
Package Downloads Report	Download Stats