rols

DOI: 10.18129/B9.bioc.rols    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see rols.

An R interface to the Ontology Lookup Service

Bioconductor version: 3.8

The rols package is an interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.

Author: Laurent Gatto <lg390 at cam.ac.uk>, with contributions from Tiago Chedraoui Silva.

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("rols")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rols")

 

HTML	R Script	An R interface to the Ontology Lookup Service
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, GO, ImmunoOncology, MassSpectrometry, Software
Version	2.10.1
In Bioconductor since	BioC 2.11 (R-2.15) (6.5 years)
License	GPL-2
Depends	methods
Imports	httr, progress, jsonlite, utils, Biobase, BiocGenerics(>= 0.23.1)
LinkingTo
Suggests	GO.db, knitr (>= 1.1.0), BiocStyle(>= 2.5.19), testthat, lubridate, DT, rmarkdown
SystemRequirements
Enhances
URL	http://lgatto.github.com/rols/
BugReports	https://github.com/lgatto/rols/issues
Depends On Me	proteomics
Imports Me
Suggests Me	MSnbase, RforProteomics
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rols_2.10.1.tar.gz
Windows Binary	rols_2.10.1.zip
Mac OS X 10.11 (El Capitan)	rols_2.10.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rols
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rols
Package Short Url	http://bioconductor.org/packages/rols/
Package Downloads Report	Download Stats