DOI: 10.18129/B9.bioc.rTRM    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see rTRM.

Identification of transcriptional regulatory modules from PPI networks

Bioconductor version: 3.8

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at gmail.com>

Citation (from within R, enter citation("rTRM")):


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PDF R Script Introduction to rTRM
PDF   Reference Manual
Text   NEWS


biocViews GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.20.0
In Bioconductor since BioC 2.13 (R-3.0) (5.5 years)
License GPL-3
Depends R (>= 2.10), igraph (>= 1.0)
Imports AnnotationDbi, DBI, RSQLite
Suggests RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked, org.Hs.eg.db, org.Mm.eg.db, ggplot2
URL https://github.com/ddiez/rTRM
BugReports https://github.com/ddiez/rTRM/issues
Depends On Me
Imports Me rTRMui
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rTRM_1.20.0.tar.gz
Windows Binary rTRM_1.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) rTRM_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rTRM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rTRM
Package Short Url http://bioconductor.org/packages/rTRM/
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