DOI: 10.18129/B9.bioc.qcmetrics    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see qcmetrics.

A Framework for Quality Control

Bioconductor version: 3.8

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto [aut, cre]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("qcmetrics")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Index file for the qcmetrics package vignette
PDF R Script The 'qcmetrics' infrastructure for quality control and reporting
PDF   Reference Manual
Text   NEWS


biocViews ImmunoOncology, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.20.1
In Bioconductor since BioC 2.13 (R-3.0) (5.5 years)
License GPL-2
Depends R (>= 3.3)
Imports Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander, S4Vectors
Suggests affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle
URL https://github.com/lgatto/qcmetrics
BugReports https://github.com/lgatto/qcmetrics/issues
Depends On Me
Imports Me MSstatsQC
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qcmetrics_1.20.1.tar.gz
Windows Binary qcmetrics_1.20.1.zip
Mac OS X 10.11 (El Capitan) qcmetrics_1.20.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/qcmetrics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qcmetrics
Package Short Url http://bioconductor.org/packages/qcmetrics/
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