DOI: 10.18129/B9.bioc.qPLEXanalyzer    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see qPLEXanalyzer.

Tools for qPLEX-RIME data analysis

Bioconductor version: 3.8

Tools for quantitative proteomics data analysis generated from qPLEX-RIME method.

Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]

Maintainer: Ashley Sawle <ads2202cu at gmail.com>

Citation (from within R, enter citation("qPLEXanalyzer")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script qPLEXanalyzer.pdf
PDF   Reference Manual
Text   NEWS


biocViews DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software
Version 1.0.4
In Bioconductor since BioC 3.8 (R-3.5) (0.5 years)
License GPL-2
Depends R (>= 3.5), Biobase, statmod, MSnbase
Imports tidyr, preprocessCore, limma, ggplot2, RColorBrewer, stats, utils, Biostrings, GenomicRanges, IRanges, graphics, BiocGenerics, stringr, purrr, tibble, ggdendro, grDevices, dplyr, magrittr, assertthat
Suggests UniProt.ws, knitr, qPLEXdata
BugReports https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues
Depends On Me qPLEXdata
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package qPLEXanalyzer_1.0.4.tar.gz
Windows Binary qPLEXanalyzer_1.0.4.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) qPLEXanalyzer_1.0.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/qPLEXanalyzer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/qPLEXanalyzer
Package Short Url http://bioconductor.org/packages/qPLEXanalyzer/
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