procoil

DOI: 10.18129/B9.bioc.procoil    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see procoil.

Prediction of Oligomerization of Coiled Coil Proteins

Bioconductor version: 3.8

The package allows for predicting whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. Additionally to the prediction itself, a prediction profile is computed which allows for determining the strengths to which the individual residues are indicative for either class. Prediction profiles can also be visualized as curves or heatmaps.

Author: Ulrich Bodenhofer

Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("procoil")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("procoil")

 

PDF	R Script	PrOCoil - A Web Service and an R Package for Predicting the Oligomerization of Coiled-Coil Proteins
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, Proteomics, Software, SupportVectorMachine
Version	2.10.0
In Bioconductor since	BioC 2.8 (R-2.13) (8 years)
License	GPL (>= 2)
Depends	R (>= 3.3.0), kebabs
Imports	methods, stats, graphics, S4Vectors, Biostrings, utils
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL	http://www.bioinf.jku.at/software/procoil/ https://github.com/UBod/procoil
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	procoil_2.10.0.tar.gz
Windows Binary	procoil_2.10.0.zip
Mac OS X 10.11 (El Capitan)	procoil_2.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/procoil
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/procoil
Package Short Url	http://bioconductor.org/packages/procoil/
Package Downloads Report	Download Stats