nudge

DOI: 10.18129/B9.bioc.nudge    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see nudge.

Normal Uniform Differential Gene Expression detection

Bioconductor version: 3.8

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("nudge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software, TwoChannel
Version	1.48.0
In Bioconductor since	BioC 1.8 (R-2.3) (13 years)
License	GPL-2
Depends
Imports	stats
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/nudge
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/nudge
Package Short Url	http://bioconductor.org/packages/nudge/
Package Downloads Report	Download Stats