multiOmicsViz

DOI: 10.18129/B9.bioc.multiOmicsViz    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see multiOmicsViz.

Plot the effect of one omics data on other omics data along the chromosome

Bioconductor version: 3.8

Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.

Author: Jing Wang <jingwang.uestc at gmail.com>

Maintainer: Jing Wang <jingwang.uestc at gmail.com>

Citation (from within R, enter citation("multiOmicsViz")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("multiOmicsViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiOmicsViz")

 

PDF R Script multiOmicsViz
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, SystemsBiology, Visualization
Version 1.6.0
In Bioconductor since BioC 3.5 (R-3.4) (2 years)
License LGPL
Depends R (>= 3.3.2)
Imports methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats
LinkingTo
Suggests BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package multiOmicsViz_1.6.0.tar.gz
Windows Binary multiOmicsViz_1.6.0.zip
Mac OS X 10.11 (El Capitan) multiOmicsViz_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/multiOmicsViz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/multiOmicsViz
Package Short Url http://bioconductor.org/packages/multiOmicsViz/
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