multiOmicsViz

DOI: 10.18129/B9.bioc.multiOmicsViz    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see multiOmicsViz.

Plot the effect of one omics data on other omics data along the chromosome

Bioconductor version: 3.8

Calculate the spearman correlation between the source omics data and other target omics data, identify the significant correlations and plot the significant correlations on the heat map in which the x-axis and y-axis are ordered by the chromosomal location.

Author: Jing Wang <jingwang.uestc at gmail.com>

Maintainer: Jing Wang <jingwang.uestc at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("multiOmicsViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiOmicsViz")

 

PDF	R Script	multiOmicsViz
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software, SystemsBiology, Visualization
Version	1.6.0
In Bioconductor since	BioC 3.5 (R-3.4) (2 years)
License	LGPL
Depends	R (>= 3.3.2)
Imports	methods, parallel, doParallel, foreach, grDevices, graphics, utils, SummarizedExperiment, stats
LinkingTo
Suggests	BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	multiOmicsViz_1.6.0.tar.gz
Windows Binary	multiOmicsViz_1.6.0.zip
Mac OS X 10.11 (El Capitan)	multiOmicsViz_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/multiOmicsViz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/multiOmicsViz
Package Short Url	http://bioconductor.org/packages/multiOmicsViz/
Package Downloads Report	Download Stats