DOI: 10.18129/B9.bioc.motifmatchr    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see motifmatchr.

Fast Motif Matching in R

Bioconductor version: 3.8

Quickly find motif matches for many motifs and many sequences. Wraps C++ code from the MOODS motif calling library, which was developed by Pasi Rastas, Janne Korhonen, and Petri Martinmäki.

Author: Alicia Schep [aut, cre], Stanford University [cph]

Maintainer: Alicia Schep <aschep at>

Citation (from within R, enter citation("motifmatchr")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews MotifAnnotation, Software
Version 1.4.0
In Bioconductor since BioC 3.6 (R-3.4) (1.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.3)
Imports Matrix, Rcpp, methods, TFBSTools, Biostrings, BSgenome, S4Vectors, SummarizedExperiment, GenomicRanges, IRanges, Rsamtools, GenomeInfoDb
LinkingTo Rcpp, RcppArmadillo
Suggests testthat, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19
SystemRequirements C++11
Depends On Me
Imports Me esATAC
Suggests Me chromVAR
Links To Me
Build Report  

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Source Package motifmatchr_1.4.0.tar.gz
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Mac OS X 10.11 (El Capitan) motifmatchr_1.4.0.tgz
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