miRNApath

DOI: 10.18129/B9.bioc.miRNApath    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see miRNApath.

miRNApath: Pathway Enrichment for miRNA Expression Data

Bioconductor version: 3.8

This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.

Author: James M. Ward <jmw86069 at gmail.com> with contributions from Yunling Shi, Cindy Richards, John P. Cogswell

Maintainer: James M. Ward <jmw86069 at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("miRNApath")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNApath")

 

PDF	R Script	miRNApath: Pathway Enrichment for miRNA Expression Data
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, DifferentialExpression, NetworkEnrichment, Pathways, Software, miRNA
Version	1.42.0
In Bioconductor since	BioC 2.3 (R-2.8) (10.5 years)
License	LGPL-2.1
Depends	methods, R (>= 2.7.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miRNApath_1.42.0.tar.gz
Windows Binary	miRNApath_1.42.0.zip
Mac OS X 10.11 (El Capitan)	miRNApath_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miRNApath
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/miRNApath
Package Short Url	http://bioconductor.org/packages/miRNApath/
Package Downloads Report	Download Stats