methVisual

DOI: 10.18129/B9.bioc.methVisual    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see methVisual.

Methods for visualization and statistics on DNA methylation data

Bioconductor version: 3.8

The package 'methVisual' allows the visualization of DNA methylation data after bisulfite sequencing.

Author: A. Zackay, C. Steinhoff

Maintainer: Arie Zackay <arie.zackay at mail.huji.ac.il>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("methVisual")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methVisual")

 

PDF	R Script	Introduction to methVisual
PDF		Reference Manual

Details

biocViews	Classification, Clustering, DNAMethylation, Software
Version	1.34.0
In Bioconductor since	BioC 2.6 (R-2.11) (9 years)
License	GPL (>= 2)
Depends	R (>= 2.11.0), Biostrings(>= 2.4.8), plotrix, gsubfn, grid, sqldf
Imports	Biostrings, ca, graphics, grDevices, grid, gridBase, IRanges, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methVisual_1.34.0.tar.gz
Windows Binary	methVisual_1.34.0.zip
Mac OS X 10.11 (El Capitan)	methVisual_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/methVisual
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/methVisual
Package Short Url	http://bioconductor.org/packages/methVisual/
Package Downloads Report	Download Stats