iteremoval

DOI: 10.18129/B9.bioc.iteremoval    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see iteremoval.

Iteration removal method for feature selection

Bioconductor version: 3.8

The package provides a flexible algorithm to screen features of two distinct groups in consideration of overfitting and overall performance. It was originally tailored for methylation locus screening of NGS data, and it can also be used as a generic method for feature selection. Each step of the algorithm provides a default method for simple implemention, and the method can be replaced by a user defined function.

Author: Jiacheng Chuan [aut, cre]

Maintainer: Jiacheng Chuan <jiacheng_chuan at outlook.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("iteremoval")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iteremoval")

 

HTML	R Script	An introduction to iteremoval
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software, StatisticalMethod
Version	1.2.0
In Bioconductor since	BioC 3.7 (R-3.5) (1 year)
License	GPL-2
Depends	R (>= 3.5.0), ggplot2 (>= 2.2.1)
Imports	magrittr, graphics, utils, GenomicRanges, SummarizedExperiment
LinkingTo
Suggests	testthat, knitr
SystemRequirements
Enhances
URL	https://github.com/cihga39871/iteremoval
BugReports	https://github.com/cihga39871/iteremoval/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iteremoval_1.2.0.tar.gz
Windows Binary	iteremoval_1.2.0.zip
Mac OS X 10.11 (El Capitan)	iteremoval_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iteremoval
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iteremoval
Package Short Url	http://bioconductor.org/packages/iteremoval/
Package Downloads Report	Download Stats