DOI: 10.18129/B9.bioc.iCOBRA    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see iCOBRA.

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: 3.8

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. It also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("iCOBRA")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Classification, Software
Version 1.10.0
In Bioconductor since BioC 3.3 (R-3.3) (3 years)
License GPL (>=2)
Depends R (>= 3.4)
Imports shiny (>=, shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR
Suggests knitr, testthat
Depends On Me
Imports Me
Suggests Me SummarizedBenchmark
Links To Me
Build Report  

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Source Package iCOBRA_1.10.0.tar.gz
Windows Binary iCOBRA_1.10.0.zip
Mac OS X 10.11 (El Capitan) iCOBRA_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCOBRA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCOBRA
Package Short Url http://bioconductor.org/packages/iCOBRA/
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