genbankr

DOI: 10.18129/B9.bioc.genbankr    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see genbankr.

Parsing GenBank files into semantically useful objects

Bioconductor version: 3.8

Reads Genbank files.

Author: Gabriel Becker [aut, cre], Michael Lawrence [aut]

Maintainer: Gabriel Becker <becker.gabriel at gene.com>

Citation (from within R, enter citation("genbankr")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("genbankr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genbankr")

 

HTML R Script An introduction to genbankr
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Software
Version 1.10.0
In Bioconductor since BioC 3.3 (R-3.3) (3 years)
License Artistic-2.0
Depends methods
Imports BiocGenerics, IRanges(>= 2.13.15), GenomicRanges(>= 1.31.10), GenomicFeatures(>= 1.31.5), Biostrings, VariantAnnotation, rtracklayer, S4Vectors(>= 0.17.28), GenomeInfoDb, Biobase
LinkingTo
Suggests RUnit, rentrez, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package genbankr_1.10.0.tar.gz
Windows Binary genbankr_1.10.0.zip
Mac OS X 10.11 (El Capitan) genbankr_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/genbankr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/genbankr
Package Short Url http://bioconductor.org/packages/genbankr/
Package Downloads Report Download Stats

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