enrichplot

DOI: 10.18129/B9.bioc.enrichplot    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see enrichplot.

Visualization of Functional Enrichment Result

Bioconductor version: 3.8

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. All the visualization methods are developed based on 'ggplot2' graphics.

Author: Guangchuang Yu [aut, cre]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("enrichplot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("enrichplot")

 

HTML	R Script	enrichplot introduction
PDF		Reference Manual

Details

biocViews	Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization
Version	1.2.0
In Bioconductor since	BioC 3.7 (R-3.5) (1 year)
License	Artistic-2.0
Depends	R (>= 3.4.0)
Imports	AnnotationDbi, cowplot, DOSE(>= 3.5.1), europepmc, ggplot2, ggplotify, ggraph, ggridges, GOSemSim, graphics, grDevices, grid, gridExtra, igraph, methods, purrr, RColorBrewer, reshape2, stats, UpSetR, utils
LinkingTo
Suggests	clusterProfiler, knitr, org.Hs.eg.db, prettydoc
SystemRequirements
Enhances
URL	https://github.com/GuangchuangYu/enrichplot
BugReports	https://github.com/GuangchuangYu/enrichplot/issues
Depends On Me
Imports Me	ChIPseeker, clusterProfiler, debrowser, meshes, ReactomePA
Suggests Me	methylGSA
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	enrichplot_1.2.0.tar.gz
Windows Binary	enrichplot_1.2.0.zip
Mac OS X 10.11 (El Capitan)	enrichplot_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/enrichplot
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/enrichplot
Package Short Url	http://bioconductor.org/packages/enrichplot/
Package Downloads Report	Download Stats