DOI: 10.18129/B9.bioc.cydar    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see cydar.

Using Mass Cytometry for Differential Abundance Analyses

Bioconductor version: 3.8

Identifies differentially abundant populations between samples and groups in mass cytometry data. Provides methods for counting cells into hyperspheres, controlling the spatial false discovery rate, and visualizing changes in abundance in the high-dimensional marker space.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at>

Citation (from within R, enter citation("cydar")):


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biocViews FlowCytometry, ImmunoOncology, MultipleComparison, Proteomics, SingleCell, Software
Version 1.6.1
In Bioconductor since BioC 3.5 (R-3.4) (2 years)
License GPL-3
Depends BiocParallel, SingleCellExperiment
Imports viridis, methods, shiny, graphics, stats, grDevices, utils, BiocGenerics, S4Vectors, flowCore, Biobase, Rcpp, BiocNeighbors, SummarizedExperiment
LinkingTo Rcpp
Suggests ncdfFlow, testthat, knitr, edgeR, limma, glmnet, BiocStyle, flowStats
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me
Links To Me
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