condcomp

DOI: 10.18129/B9.bioc.condcomp    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see condcomp.

Condition Comparison in scRNA-seq Data

Bioconductor version: 3.8

For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.

Author: Diogo P. P. Branco [aut, cre]

Maintainer: Diogo P. P. Branco <diogo.pp.branco at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("condcomp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("condcomp")

 

HTML	R Script	scRNA-seq data heterogeneity with condcomp
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Clustering, ImmunoOncology, SingleCell, Software, Visualization
Version	1.0.1
In Bioconductor since	BioC 3.8 (R-3.5) (0.5 years)
License	GPL (>=2) | file LICENSE
Depends	R (>= 3.5.0)
Imports	cluster, ggplot2, ggrepel, outliers
LinkingTo
Suggests	testthat, knitr, rmarkdown, BiocStyle, Matrix, Seurat, monocle, HSMMSingleCell
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	condcomp_1.0.1.tar.gz
Windows Binary	condcomp_1.0.1.zip
Mac OS X 10.11 (El Capitan)	condcomp_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/condcomp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/condcomp
Package Short Url	http://bioconductor.org/packages/condcomp/
Package Downloads Report	Download Stats