DOI: 10.18129/B9.bioc.coRdon    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see coRdon.

Codon Usage Analysis and Prediction of Gene Expressivity

Bioconductor version: 3.8

Tool for analysis of codon usage in various unannotated or KEGG/COG annotated DNA sequences. Calculates different measures of CU bias and CU-based predictors of gene expressivity, and performs gene set enrichment analysis for annotated sequences. Implements several methods for visualization of CU and enrichment analysis results.

Author: Anamaria Elek [cre, aut], Maja Kuzman [aut], Kristian Vlahovicek [aut]

Maintainer: Anamaria Elek <anamariaelek at>

Citation (from within R, enter citation("coRdon")):


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biocViews BiomedicalInformatics, GeneExpression, GenePrediction, GeneSetEnrichment, Genetics CellBiology, ImmunoOncology, KEGG, Metagenomics, Pathways, Software, Visualization
Version 1.0.3
In Bioconductor since BioC 3.8 (R-3.5) (0.5 years)
License Artistic-2.0
Depends R (>= 3.5)
Imports methods, stats, utils, Biostrings, Biobase, dplyr, stringr, purrr, ggplot2, data.table
Suggests BiocStyle, testthat, knitr, rmarkdown
Depends On Me
Imports Me
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