DOI: 10.18129/B9.bioc.chromstaR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see chromstaR.

Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data

Bioconductor version: 3.8

This package implements functions for combinatorial and differential analysis of ChIP-seq data. It includes uni- and multivariate peak-calling, export to genome browser viewable files, and functions for enrichment analyses.

Author: Aaron Taudt, Maria Colome Tatche, Matthias Heinig, Minh Anh Nguyen

Maintainer: Aaron Taudt <aaron.taudt at>

Citation (from within R, enter citation("chromstaR")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


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PDF R Script The chromstaR user's guide
PDF   Reference Manual
Text   NEWS


biocViews ATACSeq, ChIPSeq, DifferentialPeakCalling, HiddenMarkovModel, HistoneModification, ImmunoOncology, MultipleComparison, PeakDetection, Sequencing, Software
Version 1.8.1
In Bioconductor since BioC 3.4 (R-3.3) (2.5 years)
License Artistic-2.0
Depends R (>= 3.3), GenomicRanges, ggplot2, chromstaRData
Imports methods, utils, grDevices, graphics, stats, foreach, doParallel, S4Vectors, GenomeInfoDb, IRanges, reshape2, Rsamtools, GenomicAlignments, bamsignals, mvtnorm
Suggests knitr, BiocStyle, testthat, biomaRt
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Source Package chromstaR_1.8.1.tar.gz
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Mac OS X 10.11 (El Capitan) chromstaR_1.8.1.tgz
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