DOI: 10.18129/B9.bioc.beachmat    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see beachmat.

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: 3.8

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at>

Citation (from within R, enter citation("beachmat")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


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HTML R Script 1. Linking to beachmat from another package
HTML R Script 2. Reading data from R matrices in C++
HTML R Script 3. Writing data into R matrix objects
HTML R Script 4. Supporting arbitrary matrix classes
HTML R Script 5. Using beachmat's helper functions
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, Infrastructure, Software
Version 1.4.0
In Bioconductor since BioC 3.6 (R-3.4) (1.5 years)
License GPL-3
Depends R (>= 3.5)
Imports utils, methods, Rhdf5lib(>= 1.1.4), rhdf5, HDF5Array(>= 1.9.5), DelayedArray(>= 0.7.38), Rcpp (>= 0.12.14), BiocGenerics
LinkingTo Rcpp, Rhdf5lib
Suggests testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools
SystemRequirements C++11
Depends On Me
Imports Me
Suggests Me bsseq, DropletUtils, scater, scran
Links To Me bsseq, DropletUtils, scater, scran
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Source Package beachmat_1.4.0.tar.gz
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Mac OS X 10.11 (El Capitan) beachmat_1.4.0.tgz
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