DOI: 10.18129/B9.bioc.ballgown    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ballgown.

Flexible, isoform-level differential expression analysis

Bioconductor version: 3.8

Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.

Author: Jack Fu [aut], Alyssa C. Frazee [aut, cre], Leonardo Collado-Torres [aut], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

Maintainer: Jack Fu <jmfu at>

Citation (from within R, enter citation("ballgown")):


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biocViews DifferentialExpression, ImmunoOncology, Preprocessing, RNASeq, Software, StatisticalMethod
Version 2.14.1
In Bioconductor since BioC 3.0 (R-3.1) (4.5 years)
License Artistic-2.0
Depends R (>= 3.1.1), methods
Imports GenomicRanges(>= 1.17.25), IRanges(>= 1.99.22), S4Vectors(>= 0.9.39), RColorBrewer, splines, sva, limma, rtracklayer(>= 1.29.25), Biobase(>= 2.25.0), GenomeInfoDb
Suggests testthat, knitr
Depends On Me
Imports Me RNASeqR
Suggests Me polyester, variancePartition
Links To Me
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