DOI: 10.18129/B9.bioc.apeglm    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see apeglm.

Approximate posterior estimation for GLM coefficients

Bioconductor version: 3.8

apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.

Author: Anqi Zhu, Joseph G. Ibrahim, Michael I. Love

Maintainer: Anqi Zhu <anqizhu at live.unc.edu>

Citation (from within R, enter citation("apeglm")):


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biocViews Bayesian, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.4.2
In Bioconductor since BioC 3.6 (R-3.4) (1.5 years)
License GPL-2
Imports emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils, Rcpp
LinkingTo Rcpp, RcppEigen, RcppNumerical
Suggests DESeq2, airway, knitr, rmarkdown, testthat
Depends On Me rnaseqGene
Imports Me
Suggests Me DESeq2
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package apeglm_1.4.2.tar.gz
Windows Binary apeglm_1.4.2.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) apeglm_1.4.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/apeglm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/apeglm
Package Short Url http://bioconductor.org/packages/apeglm/
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