DOI: 10.18129/B9.bioc.ampliQueso    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ampliQueso.

Analysis of amplicon enrichment panels

Bioconductor version: 3.8

The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq

Author: Alicja Szabelska <alicja.szabelska at>; Marek Wiewiorka <marek.wiewiorka at>; Michal Okoniewski <michal at>

Maintainer: Michal Okoniewski <michal at>

Citation (from within R, enter citation("ampliQueso")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script ampliQueso primer
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Sequencing, Software, Transcription, Visualization
Version 1.20.0
In Bioconductor since BioC 2.13 (R-3.0) (5.5 years)
License GPL-2
Depends R (>= 2.15.0), rnaSeqMap(>= 2.17.1), knitr, rgl, ggplot2, gplots, parallel, doParallel, foreach, VariantAnnotation, genefilter, statmod, xtable
Imports edgeR, DESeq, samr
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Source Package ampliQueso_1.20.0.tar.gz
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Mac OS X 10.11 (El Capitan) ampliQueso_1.20.0.tgz
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