DOI: 10.18129/B9.bioc.Trendy    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Trendy.

Breakpoint analysis of time-course expression data

Bioconductor version: 3.8

Trendy implements segmented (or breakpoint) regression models to estimate breakpoints which represent changes in expression for each feature/gene in high throughput data with ordered conditions.

Author: Rhonda Bacher and Ning Leng

Maintainer: Rhonda Bacher <rbacher at>

Citation (from within R, enter citation("Trendy")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Trendy Vignette
PDF   Reference Manual
Text   NEWS


biocViews ImmunoOncology, RNASeq, Regression, Software, TimeCourse
Version 1.4.6
In Bioconductor since BioC 3.7 (R-3.5) (1 year)
License GPL-3
Depends R (>= 3.4)
Imports stats, utils, graphics, grDevices, segmented, gplots, parallel, magrittr, BiocParallel, DT, S4Vectors, SummarizedExperiment, methods, shiny, shinyFiles
Suggests BiocStyle, knitr, rmarkdown, devtools
Depends On Me
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Source Package Trendy_1.4.6.tar.gz
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