STRINGdb

DOI: 10.18129/B9.bioc.STRINGdb    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see STRINGdb.

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Bioconductor version: 3.8

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>

Citation (from within R, enter citation("STRINGdb")):

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("STRINGdb")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

 

PDF R Script STRINGdb Vignette
PDF   Reference Manual

Details

biocViews Network, Software
Version 1.22.0
In Bioconductor since BioC 2.13 (R-3.0) (5.5 years)
License GPL-2
Depends R (>= 2.14.0)
Imports png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer, gplots, hash, plotrix
LinkingTo
Suggests RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me PPInfer, scsR
Imports Me coexnet, glmSparseNet, IMMAN, pwOmics, RITAN, XINA
Suggests Me epiNEM, GeneNetworkBuilder, netSmooth, PCAN
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package STRINGdb_1.22.0.tar.gz
Windows Binary STRINGdb_1.22.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) STRINGdb_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/STRINGdb
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/STRINGdb
Package Short Url http://bioconductor.org/packages/STRINGdb/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: