DOI: 10.18129/B9.bioc.RamiGO    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.8 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RamiGO.

AmiGO visualize R interface

Bioconductor version: 3.8

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Deprecated:Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Author: Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains

Maintainer: Markus Schroeder <markus.schroeder at ucdconnect.ie>

Citation (from within R, enter citation("RamiGO")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


PDF   Reference Manual


biocViews Classification, GO, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.30.0
In Bioconductor since BioC 2.9 (R-2.14) (7.5 years)
License Artistic-2.0
Depends gsubfn, methods
Imports igraph, RCurl, png, graph
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RamiGO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RamiGO
Package Short Url http://bioconductor.org/packages/RamiGO/
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