DOI: 10.18129/B9.bioc.RaggedExperiment    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RaggedExperiment.

Representation of Sparse Experiments and Assays Across Samples

Bioconductor version: 3.8

This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns.

Author: Martin Morgan [aut, cre], Marcel Ramos [aut]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Citation (from within R, enter citation("RaggedExperiment")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews DataRepresentation, Infrastructure, Software
Version 1.6.0
In Bioconductor since BioC 3.5 (R-3.4) (2 years)
License Artistic-2.0
Depends R (>= 3.5.0), GenomicRanges
Imports BiocGenerics, GenomeInfoDb, IRanges, methods, S4Vectors, stats, SummarizedExperiment
Suggests BiocStyle, knitr, testthat, MultiAssayExperiment
BugReports https://github.com/Bioconductor/RaggedExperiment/issues
Depends On Me TxRegInfra
Imports Me omicsPrint, RTCGAToolbox, TCGAutils
Suggests Me MultiAssayExperiment, MultiDataSet
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package RaggedExperiment_1.6.0.tar.gz
Windows Binary RaggedExperiment_1.6.0.zip
Mac OS X 10.11 (El Capitan) RaggedExperiment_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RaggedExperiment
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RaggedExperiment
Package Short Url http://bioconductor.org/packages/RaggedExperiment/
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