DOI: 10.18129/B9.bioc.RNAprobR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RNAprobR.

An R package for analysis of massive parallel sequencing based RNA structure probing data

Bioconductor version: 3.8

This package facilitates analysis of Next Generation Sequencing data for which positional information with a single nucleotide resolution is a key. It allows for applying different types of relevant normalizations, data visualization and export in a table or UCSC compatible bedgraph file.

Author: Lukasz Jan Kielpinski [aut], Nikos Sidiropoulos [cre, aut], Jeppe Vinther [aut]

Maintainer: Nikos Sidiropoulos <nikos.sidiro at gmail.com>

Citation (from within R, enter citation("RNAprobR")):


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PDF R Script RNAprobR: An R package for analysis of the massive parallel sequencing based methods of RNA structure probing
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biocViews Coverage, GenomeAnnotation, Normalization, Sequencing, Software
Version 1.14.0
In Bioconductor since BioC 3.1 (R-3.2) (4 years)
License GPL (>=2)
Depends R (>= 3.1.1), GenomicFeatures(>= 1.16.3), plyr (>= 1.8.1), BiocGenerics(>= 0.10.0)
Imports Biostrings(>= 2.32.1), GenomicRanges(>= 1.16.4), IRanges(>= 2.10.5), Rsamtools(>= 1.16.1), rtracklayer(>= 1.24.2), GenomicAlignments(>= 1.5.12), S4Vectors(>= 0.14.7), graphics, stats, utils
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Source Package RNAprobR_1.14.0.tar.gz
Windows Binary RNAprobR_1.14.0.zip
Mac OS X 10.11 (El Capitan) RNAprobR_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAprobR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAprobR
Package Short Url http://bioconductor.org/packages/RNAprobR/
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