DOI: 10.18129/B9.bioc.PCpheno    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see PCpheno.

Phenotypes and cellular organizational units

Bioconductor version: 3.8

Tools to integrate, annotate, and link phenotypes to cellular organizational units such as protein complexes and pathways.

Author: Nolwenn Le Meur and Robert Gentleman

Maintainer: Nolwenn Le Meur <nlemeur at gmail.com>

Citation (from within R, enter citation("PCpheno")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script PCpheno Vignette
PDF   Reference Manual


biocViews GraphAndNetwork, Network, Proteomics, Software
Version 1.44.0
In Bioconductor since BioC 2.2 (R-2.7) (11 years)
License Artistic-2.0
Depends R (>= 2.10), Category, ScISI(>= 1.3.0), SLGI, ppiStats, ppiData, annotate(>= 1.17.4)
Imports AnnotationDbi, Biobase, Category, GO.db, graph, graphics, GSEABase, KEGG.db, methods, ScISI, stats, stats4
Suggests KEGG.db, GO.db, org.Sc.sgd.db
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCpheno_1.44.0.tar.gz
Windows Binary PCpheno_1.44.0.zip
Mac OS X 10.11 (El Capitan) PCpheno_1.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PCpheno
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCpheno
Package Short Url http://bioconductor.org/packages/PCpheno/
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