DOI: 10.18129/B9.bioc.Onassis    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Onassis.

OnASSIs Ontology Annotation and Semantic SImilarity software

Bioconductor version: 3.8

A package that allows the annotation of text with ontology terms (mainly from OBO ontologies) and the computation of semantic similarity measures based on the structure of the ontology between different annotated samples.

Author: Eugenia Galeota

Maintainer: Eugenia Galeota <eugenia.galeota at gmail.com>

Citation (from within R, enter citation("Onassis")):


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if (!requireNamespace("BiocManager", quietly = TRUE))

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HTML R Script Onassis: Ontology Annotation and Semantic Similarity software
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biocViews Annotation, Clustering, DataImport, GeneTarget, Network, Software
Version 1.4.5
In Bioconductor since BioC 3.6 (R-3.4) (1.5 years)
License GPL-2
Depends R (>= 3.5), rJava, OnassisJavaLibs
Imports GEOmetadb, RSQLite, data.table, methods, tools, utils, AnnotationDbi, RCurl, stats, DT, data.table, knitr
Suggests BiocStyle, rmarkdown, htmltools, org.Hs.eg.db, gplots, GenomicRanges, kableExtra
SystemRequirements Java (>= 1.8)
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package Onassis_1.4.5.tar.gz
Windows Binary Onassis_1.4.5.zip
Mac OS X 10.11 (El Capitan) Onassis_1.4.5.tgz
Source Repository git clone https://git.bioconductor.org/packages/Onassis
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Onassis
Package Short Url http://bioconductor.org/packages/Onassis/
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