Mirsynergy

DOI: 10.18129/B9.bioc.Mirsynergy    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Mirsynergy.

Mirsynergy

Bioconductor version: 3.8

Detect synergistic miRNA regulatory modules by overlapping neighbourhood expansion.

Author: Yue Li

Maintainer: Yue Li <yueli at cs.toronto.edu>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Mirsynergy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mirsynergy")

 

PDF	R Script	Mirsynergy
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, Software
Version	1.18.0
In Bioconductor since	BioC 2.14 (R-3.1) (5 years)
License	GPL-2
Depends	R (>= 3.0.2), igraph, ggplot2
Imports	graphics, grDevices, gridExtra, Matrix, parallel, RColorBrewer, reshape, scales, utils
LinkingTo
Suggests	glmnet, RUnit, BiocGenerics, knitr
SystemRequirements
Enhances
URL	http://www.cs.utoronto.ca/~yueli/Mirsynergy.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Mirsynergy_1.18.0.tar.gz
Windows Binary	Mirsynergy_1.18.0.zip
Mac OS X 10.11 (El Capitan)	Mirsynergy_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Mirsynergy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Mirsynergy
Package Short Url	http://bioconductor.org/packages/Mirsynergy/
Package Downloads Report	Download Stats