DOI: 10.18129/B9.bioc.MiRaGE    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MiRaGE.

MiRNA Ranking by Gene Expression

Bioconductor version: 3.8

The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.

Author: Y-h. Taguchi <tag at granular.com>

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("MiRaGE")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script How to use MiRaGE Package
PDF   Reference Manual


biocViews GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software
Version 1.24.1
In Bioconductor since BioC 2.11 (R-2.15) (6.5 years)
License GPL
Depends R (>= 3.1.0), Biobase(>= 2.23.3)
Imports BiocGenerics, S4Vectors, AnnotationDbi, BiocManager
Suggests seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData
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Follow Installation instructions to use this package in your R session.

Source Package MiRaGE_1.24.1.tar.gz
Windows Binary MiRaGE_1.24.1.zip
Mac OS X 10.11 (El Capitan) MiRaGE_1.24.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MiRaGE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MiRaGE
Package Short Url http://bioconductor.org/packages/MiRaGE/
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