MethylSeekR

DOI: 10.18129/B9.bioc.MethylSeekR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MethylSeekR.

Segmentation of Bis-seq data

Bioconductor version: 3.8

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MethylSeekR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeekR")

 

PDF	R Script	MethylSeekR
PDF		Reference Manual

Details

biocViews	DNAMethylation, MethylSeq, Sequencing, Software
Version	1.22.0
In Bioconductor since	BioC 2.12 (R-3.0) (6 years)
License	GPL (>=2)
Depends	rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports	IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
LinkingTo
Suggests	BSgenome.Hsapiens.UCSC.hg18
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	methylPipe
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MethylSeekR_1.22.0.tar.gz
Windows Binary	MethylSeekR_1.22.0.zip
Mac OS X 10.11 (El Capitan)	MethylSeekR_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MethylSeekR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MethylSeekR
Package Short Url	http://bioconductor.org/packages/MethylSeekR/
Package Downloads Report	Download Stats