DOI: 10.18129/B9.bioc.HelloRanges    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see HelloRanges.

Introduce *Ranges to bedtools users

Bioconductor version: 3.8

Translates bedtools command-line invocations to R code calling functions from the Bioconductor *Ranges infrastructure. This is intended to educate novice Bioconductor users and to compare the syntax and semantics of the two frameworks.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("HelloRanges")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script HelloRanges Tutorial
PDF   Reference Manual
Text   NEWS


biocViews Annotation, Coverage, DataImport, GenomeAnnotation, SequenceMatching, Sequencing, Software, VariantAnnotation
Version 1.8.0
In Bioconductor since BioC 3.4 (R-3.3) (2.5 years)
License GPL (>= 2)
Depends methods, BiocGenerics, S4Vectors(>= 0.17.39), IRanges(>= 2.13.12), GenomicRanges(>= 1.31.10), Biostrings(>= 2.41.3), BSgenome, GenomicFeatures(>= 1.31.5), VariantAnnotation(>= 1.19.3), Rsamtools, GenomicAlignments(>= 1.15.7), rtracklayer(>= 1.33.8), GenomeInfoDb, SummarizedExperiment
Imports docopt, stats, tools, utils
Suggests HelloRangesData, BiocStyle
Depends On Me
Imports Me OMICsPCA
Suggests Me plyranges
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package HelloRanges_1.8.0.tar.gz
Windows Binary HelloRanges_1.8.0.zip
Mac OS X 10.11 (El Capitan) HelloRanges_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HelloRanges
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HelloRanges
Package Short Url http://bioconductor.org/packages/HelloRanges/
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