GraphAlignment

DOI: 10.18129/B9.bioc.GraphAlignment    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GraphAlignment.

GraphAlignment

Bioconductor version: 3.8

Graph alignment is an extension package for the R programming environment which provides functions for finding an alignment between two networks based on link and node similarity scores. (J. Berg and M. Laessig, "Cross-species analysis of biological networks by Bayesian alignment", PNAS 103 (29), 10967-10972 (2006))

Author: Joern P. Meier <mail at ionflux.org>, Michal Kolar, Ville Mustonen, Michael Laessig, and Johannes Berg.

Maintainer: Joern P. Meier <mail at ionflux.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GraphAlignment")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GraphAlignment")

 

PDF	R Script	GraphAlignment
PDF		Reference Manual
Text		LICENSE

Details

biocViews	GraphAndNetwork, Network, Software
Version	1.46.0
In Bioconductor since	BioC 2.2 (R-2.7) (11 years)
License	file LICENSE
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.thp.uni-koeln.de/~berg/GraphAlignment/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GraphAlignment_1.46.0.tar.gz
Windows Binary	GraphAlignment_1.46.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	GraphAlignment_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GraphAlignment
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GraphAlignment
Package Short Url	http://bioconductor.org/packages/GraphAlignment/
Package Downloads Report	Download Stats