GenomicTuples

DOI: 10.18129/B9.bioc.GenomicTuples    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see GenomicTuples.

Representation and Manipulation of Genomic Tuples

Bioconductor version: 3.8

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Author: Peter Hickey <peter.hickey at gmail.com>, with contributions from Marcin Cieslik and Hervé Pagès.

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("GenomicTuples")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicTuples")

 

HTML	R Script	GenomicTuplesIntroduction
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, Infrastructure, Sequencing, Software
Version	1.16.0
In Bioconductor since	BioC 3.0 (R-3.1) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.3.0), GenomicRanges(>= 1.31.8), GenomeInfoDb(>= 1.15.2), S4Vectors(>= 0.17.25)
Imports	methods, BiocGenerics(>= 0.21.2), Rcpp (>= 0.11.2), IRanges(>= 2.13.13), data.table, stats4
LinkingTo	Rcpp
Suggests	testthat, knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL	www.github.com/PeteHaitch/GenomicTuples
BugReports	https://github.com/PeteHaitch/GenomicTuples/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GenomicTuples_1.16.0.tar.gz
Windows Binary	GenomicTuples_1.16.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	GenomicTuples_1.16.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GenomicTuples
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GenomicTuples
Package Short Url	http://bioconductor.org/packages/GenomicTuples/
Package Downloads Report	Download Stats