DOI: 10.18129/B9.bioc.FlowSOM    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see FlowSOM.

Using self-organizing maps for visualization and interpretation of cytometry data

Bioconductor version: 3.8

FlowSOM offers visualization options for cytometry data, by using Self-Organizing Map clustering and Minimal Spanning Trees.

Author: Sofie Van Gassen, Britt Callebaut and Yvan Saeys

Maintainer: Sofie Van Gassen <sofie.vangassen at ugent.be>

Citation (from within R, enter citation("FlowSOM")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


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PDF R Script FlowSOM
PDF   Reference Manual
Text   NEWS


biocViews CellBasedAssays, CellBiology, Clustering, FlowCytometry, ImmunoOncology, Software, Visualization
Version 1.14.1
In Bioconductor since BioC 3.1 (R-3.2) (4 years)
License GPL (>= 2)
Depends R (>= 3.2), igraph
Imports flowCore, ConsensusClusterPlus, BiocGenerics, tsne, XML, flowUtils
Suggests BiocStyle
URL http://www.r-project.org http://dambi.ugent.be
Depends On Me
Imports Me CATALYST, cytofkit, cytofWorkflow, diffcyt, MetaCyto
Suggests Me HDCytoData
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FlowSOM_1.14.1.tar.gz
Windows Binary FlowSOM_1.14.1.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) FlowSOM_1.14.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/FlowSOM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FlowSOM
Package Short Url http://bioconductor.org/packages/FlowSOM/
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