DOI: 10.18129/B9.bioc.CellMapper    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see CellMapper.

Predict genes expressed selectively in specific cell types

Bioconductor version: 3.8

Infers cell type-specific expression based on co-expression similarity with known cell type marker genes. Can make accurate predictions using publicly available expression data, even when a cell type has not been isolated before.

Author: Brad Nelms

Maintainer: Brad Nelms <bnelms.research at gmail.com>

Citation (from within R, enter citation("CellMapper")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script CellMapper Vignette
PDF   Reference Manual
Text   NEWS


biocViews GeneExpression, Microarray, Software
Version 1.8.0
In Bioconductor since BioC 3.4 (R-3.3) (2.5 years)
License Artistic-2.0
Depends S4Vectors, methods
Imports stats, utils
Suggests CellMapperData, Biobase, HumanAffyData, ALL, BiocStyle, ExperimentHub
Depends On Me CellMapperData
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package CellMapper_1.8.0.tar.gz
Windows Binary CellMapper_1.8.0.zip
Mac OS X 10.11 (El Capitan) CellMapper_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CellMapper
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CellMapper
Package Short Url http://bioconductor.org/packages/CellMapper/
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