DOI: 10.18129/B9.bioc.CNPBayes    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see CNPBayes.

Bayesian mixture models for copy number polymorphisms

Bioconductor version: 3.8

Bayesian hierarchical mixture models for batch effects and copy number.

Author: Stephen Cristiano, Robert Scharpf, and Jacob Carey

Maintainer: Jacob Carey <jcarey15 at>

Citation (from within R, enter citation("CNPBayes")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Implementation of Bayesian mixture models for copy number estimation
PDF R Script Overview of CNPBayes package
PDF R Script Overview of CNPBayes package
PDF   Reference Manual


biocViews Bayesian, CopyNumberVariation, Software
Version 1.12.0
In Bioconductor since BioC 3.2 (R-3.2) (3.5 years)
License Artistic-2.0
Depends R (>= 3.4.0), IRanges, GenomicRanges
Imports Rcpp (>= 0.12.1), S4Vectors, matrixStats, RColorBrewer, gtools, combinat, GenomeInfoDb(>= 1.11.6), methods, BiocGenerics, graphics, stats, coda, SummarizedExperiment, mclust, reshape2, ggplot2, magrittr, purrr, tidyr, dplyr, tibble, scales
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown, BiocCheck, MASS, VanillaICE, tidyverse
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CNPBayes_1.12.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) CNPBayes_1.12.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: