DOI: 10.18129/B9.bioc.CAMTHC    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see CAMTHC.

Convex Analysis of Mixtures for Tissue Heterogeneity Characterization

Bioconductor version: 3.8

An R package for tissue heterogeneity characterization by convex analysis of mixtures (CAM). It provides basic functions to perform unsupervised deconvolution on mixture expression profiles by CAM and some auxiliary functions to help understand the subpopulation-specific results. It also implements functions to perform supervised deconvolution based on prior knowledge of molecular markers, S matrix or A matrix. Combining molecular markers from CAM and from prior knowledge can achieve semi-supervised deconvolution of mixtures.

Author: Lulu Chen <luluchen at>

Maintainer: Lulu Chen <luluchen at>

Citation (from within R, enter citation("CAMTHC")):


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biocViews CellBiology, GeneExpression, Software
Version 1.0.0
In Bioconductor since BioC 3.8 (R-3.5) (0.5 years)
License GPL-2
Depends R (>= 3.5)
Imports methods, rJava, BiocParallel, stats, Biobase, SummarizedExperiment, corpcor, geometry, NMF, DMwR, pcaPP, apcluster, graphics
Suggests knitr, rmarkdown, BiocStyle, testthat, GEOquery, rgl
SystemRequirements Java (>= 1.8)
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Source Package CAMTHC_1.0.0.tar.gz
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