DOI: 10.18129/B9.bioc.BubbleTree    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BubbleTree.

BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

Bioconductor version: 3.8

CNV analysis in groups of tumor samples.

Author: Wei Zhu <zhuw at medimmune.com>, Michael Kuziora <kuzioram at medimmune.com>, Todd Creasy <creasyt at medimmune.com>, Brandon Higgs <higgsb at medimmune.com>

Maintainer: Todd Creasy <creasyt at medimmune.com>, Wei Zhu <weizhu365 at gmail.com>

Citation (from within R, enter citation("BubbleTree")):


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biocViews CopyNumberVariation, Coverage, Sequencing, Software
Version 2.12.0
In Bioconductor since BioC 3.1 (R-3.2) (4 years)
License LGPL (>= 3)
Depends R (>= 3.3), IRanges, GenomicRanges, plyr, dplyr, magrittr
Imports BiocGenerics(>= 0.7.5), BiocStyle, Biobase, ggplot2, WriteXLS, gtools, RColorBrewer, limma, grid, gtable, gridExtra, biovizBase, e1071, methods, grDevices, stats, utils
Suggests knitr, rmarkdown
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