BCRANK

DOI: 10.18129/B9.bioc.BCRANK    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BCRANK.

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: 3.8

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("BCRANK")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")

 

PDF	R Script	BCRANK
PDF		Reference Manual

Details

biocViews	GeneRegulation, MotifDiscovery, Software
Version	1.44.0
In Bioconductor since	BioC 2.2 (R-2.7) (11 years)
License	GPL-2
Depends	methods
Imports	Biostrings
LinkingTo
Suggests	seqLogo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	universalmotif
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BCRANK_1.44.0.tar.gz
Windows Binary	BCRANK_1.44.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	BCRANK_1.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BCRANK
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BCRANK
Package Short Url	http://bioconductor.org/packages/BCRANK/
Package Downloads Report	Download Stats