hpaVisSubcell {HPAanalyze} | R Documentation |
Visualize the the confirmed subcellular locations of genes of interest.
hpaVisSubcell(data, targetGene, color = c("#ffffb2", "#e31a1c"), customTheme = FALSE)
data |
Input the list object generated by |
targetGene |
Vector of strings of HGNC gene symbols. |
color |
Vector of 2 colors used to depict if the protein expresses in a location or not. |
customTheme |
Logical argument. If |
This function will return a ggplot2 plot object, which can be further modified if desirable. The subcellular location data is visualized as a tile graph, in which the x axis includes the inquired proteins and the y axis contain the subcellular locations.
Other visualization functions: hpaVisPatho
,
hpaVisTissue
, hpaVis
data("hpa_downloaded_histology_v18") geneList <- c('TP53', 'EGFR', 'CD44', 'PTEN', 'IDH1', 'IDH2', 'CYCS') ## A typical function call hpaVisSubcell(data=hpa_downloaded_histology_v18, targetGene=geneList)