mc3toGR {BiocOncoTK}R Documentation

create a GRanges from the MC3 mutation data

Description

create a GRanges from the MC3 mutation data

Usage

mc3toGR(bq, basicfilt = function(data) dplyr::filter(data, Consequence ==
  "non_coding_transcript_exon_variant"), maxnrec = 1e+05)

Arguments

bq

bigrquery BigQueryConnection instance

basicfilt

a dplyr::filter instance or NULL to convert entire MAF

maxnrec

numeric(1) used with dplyr::as.data.frame en route to GRanges

Value

a GRanges instance

Examples

mc3toGR

[Package BiocOncoTK version 1.2.1 Index]