plot.Assessment {AssessORF} | R Documentation |
The plot
method for Assessment
objects
## S3 method for class 'Assessment' plot(x, y = NULL, related_MinConStart = 0.8, ...)
x |
An object of class |
y |
An optional object of class |
related_MinConStart |
Minimum value of the conservation to coverage ratio needed to call a start conserved. Must range from 0 to 1. Lower values allow more conserved starts through. Recommended to use default value. |
... |
Further plotting parameters. |
If only x
is specified and x
is of subclass DataMap
, an interactive genome viewer showing how the
proteomics data and evolutionary conservation data maps to the central genome is plotted.
If only x
is specified and x
is of subclass Results
, a bar chart describing the number of genes in each
category is plotted.
If both x
and y
are specified, an interactive genome viewer showing how the proteomics data, evolutionary
evolutionary conservation data, and gene set map to the central genome is plotted.
Invisibly returns the input object x
currMapObj <- readRDS(system.file("extdata", "MGAS5005_PreSaved_DataMapObj.rds", package = "AssessORF")) currResObj <- readRDS(system.file("extdata", "MGAS5005_PreSaved_ResultsObj_Prodigal.rds", package = "AssessORF")) plot(currMapObj) plot(currResObj) plot(currMapObj, currResObj) plot(currResObj, currMapObj)