df.cuff |
A 'cuffdiff' example dataset |
df.deseq |
A 'DESeq2' example dataset |
df.edger |
A 'edgeR' example dataset |
vsBoxPlot |
Box plot for log_{10}(FPKM or CPM) distributions |
vsDEGMatrix |
Differential gene expression matrix |
vsFourWay |
Four-Way plot for comparison of log fold changes in a multiple factor RNA-seq experiment from different analytical objects |
vsMAMatrix |
MA plot matrix from log_{2} fold changes and -log_{10}(p-values) |
vsMAPlot |
MA plot from mean expression and log fold changes from different analytical objects |
vsScatterMatrix |
Scatter plot matrix of log_{10}(FPKM or CPM) values |
vsScatterPlot |
Scatter plot of log_{10}(FPKM or CPM) values |
vsVolcano |
Volcano plot from log_{2} fold changes and -log_{10}(p-values) |
vsVolcanoMatrix |
Volcano plot matrix from log_{2} fold changes and -log_{10}(p-values) |