Hits Selection for Synthetic Lethal RNAi Screen Data


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Documentation for package ‘synlet’ version 1.12.1

Help Pages

bScore Calculate B-score
exampleDat Synthetic lethal RNAi screen example data.
madSelect Select hits basing on median +- k*MAD
plateHeatmap Heatmap of all plates
rankProdHits Select hits by the rank product method
rsaHits Select hits by RSA
scatterPlot Scatter plot of RNAi screen results
siRNAPlot Plot siRNA data and quality metrics.
tTest student's t-test basing on B-score
zFactor Calcualte the Z and Z' factor