plateCore-package | plateCore: A Bioconductor package for high throughput analysis of flow cytometry data |
%on% | Methods for Function %on% in Package 'plateCore' |
%on%-method | Methods for Function %on% in Package 'plateCore' |
%on%-methods | Methods for Function %on% in Package 'plateCore' |
applyControlGates | Apply control gates to a flowPlate |
applyControlGates-method | Apply control gates to a flowPlate |
applyControlGates-methods | Apply control gates to a flowPlate |
compensate | Compensate a flowPlate to correct for the effects of spillover. |
compensate-method | Compensate a flowPlate to correct for the effects of spillover. |
compensationSet | Sample Compensation Data Set |
densityplot | One-dimensional density plots for flowPlates |
densityplot-method | One-dimensional density plots for flowPlates |
fixAutoFl | Correct for the effects of cell size (FSC) on autofluorescence |
fixAutoFl-method | Correct for the effects of cell size (FSC) on autofluorescence |
flowPlate | Create a flowPlate |
flowPlate-class | The flowPlate class. |
flowPlate-method | Create a flowPlate |
fpbind | Merge multiple flowPlates into a single virtual flowPlate |
fpbind-method | Merge multiple flowPlates into a single virtual flowPlate |
getGroups | Retrieve Negative control groups from a flowPlate |
getGroups-method | Retrieve Negative control groups from a flowPlate |
gutterPlot | gutterPlot |
gutterPlot-method | gutterPlot |
mfiPlot | mfiPlot |
mfiPlot-method | mfiPlot |
panel.densityplot.flowPlate | Lattice-flowViz style panel function for flowPlate densityplot. |
panel.xyplot.flowPlate | Lattice-flowViz style panel function for flowPlate xyplot. |
pbmcPlate | pbmcPlate Data Set |
phenoData-method | Create a flowPlate |
plateCore | plateCore: A Bioconductor package for high throughput analysis of flow cytometry data |
plateSet | Get the flowSet from a flowPlate object |
plateSet-method | Get the flowSet from a flowPlate object |
plotPlate | plotPlate |
plotPlate-method | plotPlate |
prepanel.densityplot.flowPlate | Lattice-flowViz style panel function for flowPlate densityplot. |
prepanel.xyplot.flowPlate | Lattice-flowViz style panel function for flowPlate xyplot. |
sampleNames-method | Create a flowPlate |
setControlGates | Create control gates for a flowPlate |
setControlGates-method | Create control gates for a flowPlate |
Subset | Subset |
Subset-method | Subset |
summaryStats | Compute summary statistics on a flowPlate |
summaryStats-method | Compute summary statistics on a flowPlate |
wellAnnotation | Retrieve a data.frame describing the content of a flowPlate |
wellAnnotation-method | Retrieve a data.frame describing the content of a flowPlate |
xyplot | Scatter plots (dotplots) for flowPlates. |
xyplot-method | Scatter plots (dotplots) for flowPlates. |
[-method | The flowPlate class. |
[[-method | The flowPlate class. |