Pathway fingerprinting for analysis of gene expression arrays


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Documentation for package ‘pathprint’ version 1.12.0

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consensusDistance Calculate a distribution of distances from a consensus fingerprint
consensusFingerprint Construct a consensus fingerprint
customCDFAnn Map probes to Entrez Gene IDs
diffPathways Detect differentially activated pathways between fingerprints
exprs2fingerprint Create a pathway fingerprint from a gene expression table.
genesets Names of genesets used in pathprint
GEO.fingerprint.matrix Create a pathway fingerprint from a gene expression table.
GEO.metadata.matrix Create a pathway fingerprint from a gene expression table.
Introduction to pathprint Pathway fingerprinting for analysis of gene expression arrays
pathprint Pathway fingerprinting for analysis of gene expression arrays
pathprint.Ce.gs Pathprint genesets - C. elegans
pathprint.Dm.gs Pathprint genesets - D. melanogaster
pathprint.Dr.gs Pathprint genesets - D. rerio
pathprint.Hs.gs Pathprint genesets - H. sapiens
pathprint.Mm.gs Pathprint genesets - M. musculus
pathprint.Rn.gs Pathprint genesets - R. norvegicus
platform.thresholds Pathway fingerprint threshold values
pluripotents.frame Manually curated list of pluripotent arrays
single.chip.enrichment Calculate enrichment of a list of genesets in an array
thresholdFingerprint Apply threshold values to produce a Pathway Fingerprint