R Interface to the metaviz web app for interactive metagenomics data analysis and visualization


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Documentation for package ‘metavizr’ version 1.6.2

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buildMetavizGraph Build a MetavizTree object from another object
buildMetavizGraph-method Build a MetavizTree object from another object
buildMetavizGraphInnerNodes Build a MetavizTree object from another object
buildMetavizGraphInnerNodes-method Build a MetavizTree object from another object
EpivizMetagenomicsData Data container for MRexperiment objects
EpivizMetagenomicsData-class Data container for MRexperiment objects
EpivizMetagenomicsDataInnerNodes Data container for MRexperiment objects
EpivizMetagenomicsDataInnerNodes-class Data container for MRexperiment objects
EpivizMetagenomicsDataTimeSeries Data container for MRexperiment objects
EpivizMetagenomicsDataTimeSeries-class Data container for MRexperiment objects
generateSelection Method to select and set aggregation type to nodes in FacetZoom
MetavizApp Class managing connection to metaviz application.
MetavizApp-class Class managing connection to metaviz application.
metavizControl metavizr settings
MetavizGraph Graph implementation to query hierarchical feature data
MetavizGraph-class Graph implementation to query hierarchical feature data
MetavizGraphInnerNodes Graph implementation to query hierarchical feature data
MetavizGraphInnerNodes-class Graph implementation to query hierarchical feature data
register-method Generic method to register data to the epiviz data server
register-method Generic method to register data to the epiviz data server
replaceNAFeatures Method to replace NA or null feature labels with Not_Annotated_hierarchy-level
setMetavizStandalone set metaviz app standalone settings
startMetaviz Start metaviz app and create 'MetavizApp' object to manage connection.
startMetavizStandalone Start metaviz app in standalone (locally) and create 'MetavizApp' object to manage connection.
validateObject validate 'MRexperiment-class' object